Source code for torcheeg.utils.pyg.visualize
import io
import itertools
from typing import Dict, List, Union
import matplotlib
import matplotlib.pyplot as plt
import networkx as nx
import numpy as np
import PIL
import torch_geometric
from matplotlib import colors
from pylab import cm
from torch_geometric.data import Data
def plot2image(ploter):
buf = io.BytesIO()
ploter.savefig(buf, bbox_inches='tight', pad_inches=0.0)
buf.seek(0)
return PIL.Image.open(buf)
[docs]def plot_graph(data: Data,
channel_location_dict: Dict[str, List[int]],
color: Union[colors.Colormap, str] = 'hsv'):
r'''
Visualize a graph structure. For the electrode position information, please refer to constants grouped by dataset:
- datasets.constants.emotion_recognition.deap.DEAP_CHANNEL_LOCATION_DICT
- datasets.constants.emotion_recognition.dreamer.DREAMER_CHANNEL_LOCATION_DICT
- datasets.constants.emotion_recognition.seed.SEED_CHANNEL_LOCATION_DICT
- ...
.. code-block:: python
from torcheeg.utils.pyg import plot_graph
from torcheeg.datasets.constants import DEAP_CHANNEL_LOCATION_DICT
from torcheeg.transforms.pyg import ToG
import numpy as np
eeg = np.random.randn(32, 128)
g = ToG(DEAP_ADJACENCY_MATRIX)(eeg=eeg)['eeg']
img = plot_graph(g)
# If using jupyter, the output image will be drawn on notebooks.
.. image:: _static/plot_graph.png
:alt: The output image of plot_graph
:align: center
|
Args:
data (torch_geometric.data.Data): The input graph structure represented by torch_geometric.
channel_location_dict (dict): Electrode location information. Represented in dictionary form, where :obj:`key` corresponds to the electrode name and :obj:`value` corresponds to the row index and column index of the electrode on the grid.
color (colors.Colormap or str): The color map used for the face color of the axes. (default: :obj:`hsv`)
Returns:
np.ndarray: The output image in the form of :obj:`np.ndarray`.
'''
fig = plt.figure()
# convert to networkx
edge_attrs = ['edge_weight'] * len(data.edge_weight.tolist())
g = torch_geometric.utils.to_networkx(data, edge_attrs=edge_attrs)
# get color of edges
edge_weights = [
edgedata["edge_weight"] for _, _, edgedata in g.edges(data=True)
]
colormap = cm.get_cmap(color)
edge_colors = colormap(edge_weights)
# get posistion of nodes
# flip bottom down
max_pos = max(list(itertools.chain(*channel_location_dict.values())))
# rot 90
pos = {
i: [v[1], max_pos - v[0]]
for i, v in enumerate(channel_location_dict.values())
}
labels = {i: v for i, v in enumerate(channel_location_dict.keys())}
# draw network
nx.draw_networkx(g,
node_size=550,
node_color='w',
edgecolors='w',
pos=pos,
labels=labels,
with_labels=True,
edge_color=edge_colors)
plt.colorbar(matplotlib.cm.ScalarMappable(cmap=colormap))
# remove margin
plt.gca().set_axis_off()
plt.subplots_adjust(top=1, bottom=0, right=1, left=0, hspace=0, wspace=0)
plt.margins(0, 0)
plt.gca().xaxis.set_major_locator(plt.NullLocator())
plt.gca().yaxis.set_major_locator(plt.NullLocator())
img = plot2image(fig)
plt.show()
return np.array(img)