Source code for torcheeg.model_selection.k_fold_cross_subject

import os
import re
from copy import copy
from typing import Dict, Tuple, Union

import numpy as np
import pandas as pd
from sklearn import model_selection
from torcheeg.datasets.module.base_dataset import BaseDataset


class KFoldCrossSubject:
    r'''
    A tool class for k-fold cross-validations, to divide the training set and the test set. One of the most commonly used data partitioning methods, where the data set is divided into k subsets of subjects, with one subset subjects being retained as the test set and the remaining k-1 subset subjects being used as training data. In most of the literature, K is chosen as 5 or 10 according to the size of the data set.

    .. image:: _static/KFoldCrossSubject.png
        :alt: The schematic diagram of KFoldCrossSubject
        :align: center

    |

    .. code-block:: python

        cv = KFoldCrossSubject(n_splits=5, shuffle=True, split_path='./split')
        dataset = DEAPDataset(io_path=f'./deap',
                              root_path='./data_preprocessed_python',
                              online_transform=transforms.Compose([
                                  transforms.To2d(),
                                  transforms.ToTensor()
                              ]),
                              label_transform=transforms.Compose([
                                  transforms.Select(['valence', 'arousal']),
                                  transforms.Binary(5.0),
                                  transforms.BinariesToCategory()
                              ]))

        for train_dataset, test_dataset in cv.split(dataset):
            train_loader = DataLoader(train_dataset)
            test_loader = DataLoader(test_dataset)
            ...

    Args:
        n_splits (int): Number of folds. Must be at least 2. (default: :obj:`5`)
        shuffle (bool): Whether to shuffle the data before splitting into batches. Note that the samples within each split will not be shuffled. (default: :obj:`False`)
        random_state (int, optional): When shuffle is :obj:`True`, :obj:`random_state` affects the ordering of the indices, which controls the randomness of each fold. Otherwise, this parameter has no effect. (default: :obj:`None`)
        split_path (str): The path to data partition information. If the path exists, read the existing partition from the path. If the path does not exist, the current division method will be saved for next use. (default: :obj:`./split/k_fold_dataset`)
    '''
    def __init__(self,
                 n_splits: int = 5,
                 shuffle: bool = False,
                 random_state: Union[None, int] = None,
                 split_path: str = './split/k_fold_dataset'):
        self.n_splits = n_splits
        self.shuffle = shuffle
        self.random_state = random_state
        self.split_path = split_path

        self.k_fold = model_selection.KFold(n_splits=n_splits,
                                            shuffle=shuffle,
                                            random_state=random_state)

    def split_info_constructor(self, info: pd.DataFrame) -> None:
        subject_ids = list(set(info['subject_id']))

        for fold_id, (train_index_subject_ids,
                      test_index_subject_ids) in enumerate(
                          self.k_fold.split(subject_ids)):

            if len(train_index_subject_ids) == 0 or len(
                    test_index_subject_ids) == 0:
                raise ValueError(
                    f'The number of training or testing subjects is zero.')

            train_subject_ids = np.array(
                subject_ids)[train_index_subject_ids].tolist()
            test_subject_ids = np.array(
                subject_ids)[test_index_subject_ids].tolist()

            train_info = []
            for train_subject_id in train_subject_ids:
                train_info.append(info[info['subject_id'] == train_subject_id])
            train_info = pd.concat(train_info, ignore_index=True)

            test_info = []
            for test_subject_id in test_subject_ids:
                test_info.append(info[info['subject_id'] == test_subject_id])
            test_info = pd.concat(test_info, ignore_index=True)

            train_info.to_csv(os.path.join(self.split_path,
                                           f'train_fold_{fold_id}.csv'),
                              index=False)
            test_info.to_csv(os.path.join(self.split_path,
                                          f'test_fold_{fold_id}.csv'),
                             index=False)

    @property
    def fold_ids(self):
        indice_files = list(os.listdir(self.split_path))

        def indice_file_to_fold_id(indice_file):
            return int(re.findall(r'fold_(\d*).csv', indice_file)[0])

        fold_ids = list(set(map(indice_file_to_fold_id, indice_files)))
        fold_ids.sort()
        return fold_ids

    def split(self, dataset: BaseDataset) -> Tuple[BaseDataset, BaseDataset]:
        if not os.path.exists(self.split_path):
            os.makedirs(self.split_path)
            self.split_info_constructor(dataset.info)

        fold_ids = self.fold_ids

        for fold_id in fold_ids:
            train_info = pd.read_csv(
                os.path.join(self.split_path, f'train_fold_{fold_id}.csv'))
            test_info = pd.read_csv(
                os.path.join(self.split_path, f'test_fold_{fold_id}.csv'))

            train_dataset = copy(dataset)
            train_dataset.info = train_info

            test_dataset = copy(dataset)
            test_dataset.info = test_info

            yield train_dataset, test_dataset

    @property
    def repr_body(self) -> Dict:
        return {
            'n_splits': self.n_splits,
            'shuffle': self.shuffle,
            'random_state': self.random_state,
            'split_path': self.split_path
        }

    def __repr__(self) -> str:
        # init info
        format_string = self.__class__.__name__ + '('
        for i, (k, v) in enumerate(self.repr_body.items()):
            # line end
            if i:
                format_string += ', '
            # str param
            if isinstance(v, str):
                format_string += f"{k}='{v}'"
            else:
                format_string += f"{k}={v}"
        format_string += ')'
        return format_string